Sites with Molecules

Sites with Molecules

No.

Site

Content / Viewer

Comments

1

http://www.sci.ouc.bc.ca/chem/molecule/molecule.html

1100 organic molecules Chime Much more than just pictures for some

pdb format, several indexes, multiple bonds not necessarily indicated

2

http://c4.cabrillo.cc.ca.us/projects/library/index.html

400 structures Chime presentation

organic and inorganic, instructions

3

http://www.wsu.edu/~wherland/

Structure Database 250 molecules and ions Chime, WebLab Viewer

Chime Radii periodic table of the radii

Not idealized, double bonds not necessarily indicated

4

http://www.dcu.ie/~chemist/pratt/pdb/pdb.htm then select "javascript version"

400 molecules Chime, use "HTML version"

to keep measurements window

two windows allows comparisons Ireland

5

a. http://webasaurus.dcrt.nih.gov/molbio/db.html

b. http://webasaurus.dcrt.nih.gov/cgi-bin/pdb

Molecules R Us Selecting "PDB Viewer" as the output requested gives Chime

PDB Database

6

http://cst-www.nrl.navy.mil/lattice/index.html

Crystal lattice structures, select a lattice to see the actual compounds available Chime works if you click "examine the structure"

If no atoms are visible change to ball and stick or spacefill display

7

http://www.nyu.edu/pages/mathmol/library/index.html

MathMol, Selection of "PDB" brings up full screen Chime image, mostly biological molecules

water, ice,

8

http://info.bio.cmu.edu/Courses/BiochemMols/BCMolecules.html

Molecular models for biochemistry, Chime presentations amino acids, peptides, proteins, nucleic acids, nucleotides and more

 

9

http://iumsc11.chem.indiana.edu/common/Weird_and_neat/buckyball/buckministerfullerene.htm

Fullerene gallery, built-in viewer

 

10

http://www.colby.edu/chemistry

http://www.colby.edu/chemistry/webmo/mointro.html

Many organic and inorganic structures in a small Chime window, also other results of structure calculation

 

11

http://www.recipnet.indiana.edu/common/common.html

Indiana Univ., Common molecules section growing, includes elements, minerals and many others. Chime is an option

 

12

http://www.shef.ac.uk/chemistry/web-elements/main/index.html

http://www.sci.ouc.bc.ca/chem/web-elements/

http://xplor.csb.yale.edu/web-elements-I/

WebElements periodic table, an excellent resource, includes Chime image of each crystal structure

Earlier, less complete version of WebElements, faster server for N. America and adequate for many questions.

 

13

http://wwwchem.uwimona.edu.jm:1104/courses/comligs.html

16 coordination compounds, small Chime windows

 

14

http://geo.ucalgary.ca/~tmenard/crystal/crystal.html

Crystal structures of Minerals

Calgary

15

http://www.ch.ic.ac.uk/vchemlib/mol/mol.html

Structures and info about cmpds , small Chime window

 

16

http://www.ibc.wustl.edu/moirai/klotho/compound_list.html

Klotho select compound for GIF image and then "interactive viewer" for Chime

439 mostly biochemical cmpds, nomenclature carefully defined

 

17

http://www.chemistry.ohio-state.edu/~lars/liquid.html

1.5MB animation of liquid water

H bond lines form and break

18

http://www-wilson.ucsd.edu/education/gchem/statesofmatter/stunit.html

http://www-wilson.ucsd.edu/education/gchem/

Animation of unit cells, 4.2MB

 

GenChem site

UCSD genchem site

19

http://www.almaden.ibm.com/vis/vis_lab.html

select "vibrations", mpeg movie,

select docking and mpeg movie (2.7MB)

 

20

http://www.ch.ic.ac.uk/aptonge/mdl/normal_modes/main2.html

Select frequency to view motion

ignore error message

21

http://www.cchem.berkeley.edu/ChemResources/Vibrations/index.html

some odd vibrations of benzene

 

22

http://www.uky.edu/~holler/html/s.html

Atomic orbitals, single drawing of each through g and rotating animation

 

23

http://www-wilson.ucsd.edu/education/gchem/atomorbs/aovis.html

Slides of text and brief animations of orbitals

 

24

http://necs01.dne.bnl.gov/CoN/index.html

Chart of the nuclides

select region, select nuclide for detailed info

no abundances

 

25

http://www.wag.caltech.edu/gallery/gallery_dendrimer.html

Dendrimers as GIF's

 

26

http://mc2.cchem.berkeley.edu/Smells/index.html

Smell Database 2 views, not Chime

pdb file could be viewed with other viewers

27

http://www.ill.fr/dif/3D-crystals/

Making Matter

Crystal structures including basic ones, gems and minerals, superconductors, and others

VRML Crystal structures

28

http://www.chem.lsu.edu/lucid/maverick/crystals.htm

Inorganic crystals

Chime, and some discussion

29

http://www.fatburen.org/chemlibris/chemlibris/shockmenu.html

Animated SN1, SN2

Reguires Shockwave

30

http://www.umass.edu/microbio/chime/hemoglob/index.htm

Chime tutorial on hemoglobin and sickle cell

 

31

http://cti.itc.Virginia.EDU/~cmg/

Interactive Biochemistry at Virginia

 

32

http://www.chem.ox.ac.uk/mom/

Molecule of the Month

 

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